PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G048400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 262aa    MW: 29911.5 Da    PI: 6.9147
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G048400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.86.6e-37111121101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 
                          aCaaCk++rr+Ca+dC+lap+fp++++++f n+hklFG++n++++lk+lp+ e +++a++s++y+A+ar++dPv G++++i++l+ q+e 
  Manes.03G048400.1.p  11 ACAACKYQRRRCAPDCALAPHFPSNRASDFLNAHKLFGVRNIVRTLKKLPTFEeKKHAITSMIYQANARVSDPVGGCHRIITQLKTQIEF 100
                          7************************************************765549*********************************** PP

               DUF260  90 lkaelallkeel 101
                           + +l+l+++++
  Manes.03G048400.1.p 101 YELQLNLVRQQI 112
                          ********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.92410112IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3411109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MRPNTPGGNQ ACAACKYQRR RCAPDCALAP HFPSNRASDF LNAHKLFGVR NIVRTLKKLP  60
TFEEKKHAIT SMIYQANARV SDPVGGCHRI ITQLKTQIEF YELQLNLVRQ QIAFHQRLTS  120
HNLQDSTPLN VYDDVQLQQH EEPSIVHVDY QHPHNYNSFD DVVASHHLKD SPPLNIYDSA  180
QLHPIGYVEQ QQQQQQEEPA IVKIESEELS SSCLGENDSQ LSPSSKQHFA VDEIIFQMIH  240
SRDYSFEKNP QFKFSFLSCK A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LRW11e-35LBD22_ARATH; LOB domain-containing protein 22
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2781523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-36LOB domain-containing protein 22